Taxa:
Select
(unselect)
Select All
Unselect All
Metadata:
View
Download
Labels:
Likelihood Weight
Display Names
Tree:
Subtree
(new window)
Collapse Clade
Newick tree
Phylogeny
Network
Pie Charts
Send to new tree
Rename node
×
Rename Node
Cancel
Rename
Help
Home
Update Metadata
Colors Download
Colors Upload
Color Editor
Color Reset
Save MEP
mep
Taxon name
TaxID genus
TaxID species
Select By List
Update selections
Search:
Leaf name
Highlighted taxa
View
Download
Select All
Select All Queries
Unselect All
Phylogeny
Network
UniFrac
ClaaTU
PopPhy-CNN
Pie Charts
Newick Tree
Pruned Tree
Send to new tree
Toggle map view
Layout
Rectangular
Radial
Format
Name list
CSV (sequences)
CSV (specimen metadata)
CSV (unknowns specimen metadata in OTUs)
NEXUS
PHYLIP
FASTA
Aligned
Not aligned
All queries within OTUs
MSAViewer
Sequence
Covid loci
Select All
Unselect All
More/Less loci
Analysis mode
Separate
Concatenated
Show taxa for data
Remove taxa with no data
Remove sites with all ?-
Remove Exset or trimAl exclusions
Collapse
expand/collapse
download
subtree
likelihood weight
display labels
Display
Color all
Color excluding singletons
Color only singletons
Show 1 column legend
Order legend alphabetically
No transparency
Italicize names
Hide names
Show names
Hide terminal circles
Font family
Arial (sans-serif)
Verdana (sans-serif)
Tahoma (sans-serif)
Trebuchet MS (sans-serif)
Times New Roman (serif)
Georgia (serif)
Garamond (serif)
Courier New (monospace)
Font size adjust (per cent)
+200
+160
+140
+120
+100
+90
+80
+70
+60
+50
+40
+30
+20
+10
default
-10
-20
-30
-40
-50
-60
-70
Font size adjust bootstrap values (per cent)
+200
+160
+140
+120
+100
+90
+80
+70
+60
+50
+40
+30
+20
+10
default
-10
-20
-30
-40
Colorize Leaves
Values in OTU on hover
Background
Text
Colorize band 2
Colorize band 3
more+
Colorize band 4
Colorize band 5
Colorize band 6
Colorize Branches
Branch Width:
0
0.05
0.1
0.25
0.5
1
2
3
4
5
6
7
8
9
10
Branch extension width:
0
0.02
0.05
0.1
0.2
0.5
1
2
3
4
Bands width multiplier:
0.25
0.5
0.75
1
1.25
1.5
1.75
2
3
5
6
Circle diameter muliplier:
0.05
0.1
0.2
0.5
0.75
1
1.5
2
4
6
10
15
20
30
50
100
200
Bootstrap width:
1.5
2
3
4
5
6
Node labels
Bootstrap Values
(thick lines)
Value:
Bootstrap Values
(numbers)
Value:
IQ-TREE Values
SH-aLRT /
ultrafast bootstrap
Posterior Probability
Edge numbers
Use branch length
Align names
Align attributes
Show continuation ticks
Horizontal Scaling
Vertical Scaling
Scale bar position
Map options
data points:
all
references
queries
all (include not placed)
references (include not placed)
queries (include not placed)
Export Tree
Zoom:
Format:
PNG
SVG
TIFF
PDF
multipagePDF
Tree
Legend
Combined
Export map
Save image
View html
GeoJSON
Mapping tutorial