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mep

• Taxon name
• TaxID genus
• TaxID species

Select By List
Update selections

Search:

Leaf name

Highlighted taxa

View Download Select All Select All Queries Unselect All Phylogeny Network UniFrac ClaaTU PopPhy-CNN Pie Charts Newick Tree Pruned Tree Send to new tree Toggle map view

Layout

• Rectangular
• Radial

Format

• Name list
• CSV (sequences)
• CSV (specimen metadata)
• CSV (unknowns specimen metadata in OTUs)
• NEXUS
• PHYLIP
• FASTA

• Aligned
• Not aligned
• All queries within OTUs
• MSAViewer

Sequence

Covid loci

More/Less loci

Analysis mode

• Separate
• Concatenated

• Show taxa for data
• Remove taxa with no data
• Remove sites with all ?-
• Remove Exset or trimAl exclusions

Collapse

• expand/collapse
• download
• subtree
• likelihood weight
• display labels

Display

• Color all
• Color excluding singletons
• Color only singletons
• Show 1 column legend
• Order legend alphabetically
• No transparency
• Italicize names
• Hide names
• Show names
• Hide terminal circles

• Font family Arial (sans-serif) Verdana (sans-serif) Tahoma (sans-serif) Trebuchet MS (sans-serif) Times New Roman (serif) Georgia (serif) Garamond (serif) Courier New (monospace)
Font size adjust (per cent) +200 +160 +140 +120 +100 +90 +80 +70 +60 +50 +40 +30 +20 +10 default -10 -20 -30 -40 -50 -60 -70
• Font size adjust bootstrap values (per cent) +200 +160 +140 +120 +100 +90 +80 +70 +60 +50 +40 +30 +20 +10 default -10 -20 -30 -40

• Colorize Leaves

• Values in OTU on hover
• Background
• Text

• Colorize band 2

• Colorize band 3

• more+

• Colorize band 4

• Colorize band 5

• Colorize band 6

• Colorize Branches

• Branch Width: 0 0.05 0.1 0.25 0.5 1 2 3 4 5 6 7 8 9 10
• Branch extension width: 0 0.02 0.05 0.1 0.2 0.5 1 2 3 4
• Bands width multiplier: 0.25 0.5 0.75 1 1.25 1.5 1.75 2 3 5 6
• Circle diameter muliplier: 0.05 0.1 0.2 0.5 0.75 1 1.5 2 4 6 10 15 20 30 50 100 200
• Bootstrap width: 1.5 2 3 4 5 6

Node labels

• Bootstrap Values
      (thick lines)
• Value:
• Bootstrap Values
      (numbers)
• Value:
• IQ-TREE Values
       SH-aLRT /
       ultrafast bootstrap
• Posterior Probability
• Edge numbers
• Use branch length
• Align names
• Align attributes
• Show continuation ticks

Horizontal Scaling

Vertical Scaling

Map options

data points:

all references queries all (include not placed) references (include not placed) queries (include not placed)

Export Tree

Zoom:

Format:

PNG SVG TIFF PDF multipagePDF Tree Legend Combined

Export map

Save image View html GeoJSON Mapping tutorial